matplotlib-users Mailing List for matplotlib

I've created matplotlib colormaps from all the color tables at 
http://colorbrewer.org, and 
http://geography.uoregon.edu/datagraphics/color_scales.htm.  You can 
grab them at 
http://www.cdc.noaa.gov/people/jeffrey.s.whitaker/python/extracmaps.py.gz.  
Also included are the Generic Mapping Tools colormaps (at least the ones 
that are different from the built in mpl colormaps), for a total of 60.  
You can just paste the contents of that file into cm.py just above the 
"def get_cmap" line (although this will not make them available via 
pylab calls like 'jet()' and 'hot()'). To get a quick view of what the 
colormaps look like, I use this little script:

import matplotlib.cm as cm
import pylab as p
names = cm.datad.keys()
print len(names),'total color maps'
def plot_colorbar(cmapname,nsteps=None):
    colormap = cm.__dict__[cmapname]
    fig=p.figure(figsize=(8,1))
    ax = fig.add_axes([0.05,0.05,0.9,0.70])
    if nsteps == None:
        nsteps = colormap.N+1
    clevs = p.linspace(0,1,nsteps+1)
    C = p.array([clevs,clevs])
    X,Y = p.meshgrid(clevs,[0,1])
    levs,coll = ax.contourf(C, Y, X, nsteps-1, cmap=colormap)
    ax.set_xticks([])
    ax.set_yticks([])
    p.title(cmapname)
    p.show()
if __name__ == "__main__":
    cmapname = raw_input('color map name:')
    if cmapname not in names:
        raise KeyError, 'invalid colormap name, valid names are 
'+repr(names)
    plot_colorbar(cmapname)

Enjoy!


-Jeff

-- 
Jeffrey S. Whitaker         Phone  : (303)497-6313
Meteorologist               FAX    : (303)497-6449
NOAA/OAR/CDC  R/CDC1        Email  : Jef...@no...
325 Broadway                Office : Skaggs Research Cntr 1D-124
Boulder, CO, USA 80303-3328 Web    : http://tinyurl.com/5telg

> And the answer, for the archives.... ?

Sorry, I should have included this in my last email. 

It's quite easy:

from MA import set_print_limit
set_print_limit(NEW_LIMIT_HERE)

Regards,
Sascha

Don't I feel silly.  --verbose-helpful is quite helpful.  I was loading 
an rc file I didn't know I had saved in the directory where another test 
  script was saved.  I deleted that other rc file with the bad backend 
string and everything is fine.

Ryan

John Hunter wrote:
>>>>>>"Ryan" == Ryan Krauss <rya...@co...> writes:
> 
> 
>     Ryan> I have an interesting problem importing pylab.  Most of my
>     Ryan> work is stored on a FAT32 partition so I can access it from
>     Ryan> windows or linux.  If I run python from a dos command open
>     Ryan> on that partition I get:
> 
>     Ryan> E:\pythonscripts>python Enthought Edition build 1069 Python
>     Ryan> 2.3.5 (#62, Mar 22 2005, 21:53:13) [MSC v.1200 32 bit
>     Ryan> (Intel)] on win32 Type "help", "copyright", "credits" or
>     Ryan> "license" for more information.
>     >>>> import pylab
>     Ryan> Traceback (most recent call last): File "<stdin>", line 1,
>     Ryan> in ?  File "C:\Python23\Lib\site-packages\pylab.py", line 1,
>     Ryan> in ?  from matplotlib.pylab import * File
>     Ryan> "C:\Python23\Lib\site-packages\matplotlib\pylab.py", line
>     Ryan> 199, in ?  import backends File
>     Ryan> "C:\Python23\Lib\site-packages\matplotlib\backends\__init__.py",
>     Ryan> line 15, in ?  raise ValueError, 'Unrecognized backend %s' %
>     Ryan> backend ValueError: Unrecognized backend WxAgg
> 
> My guess is that this has nothing to do with partitions and that you
> may be reading two different rc files.  One has 
> 
>   backend : WxAgg
> 
> which is erroneous (should  be WXAgg)
> 
> and the other has the win32 default
> 
>   backend : TkAgg
> 
> which is working for you.
> 
> To test, create a script test.py
> 
>   import pylab
> 
> and run it on both partitions with
> 
>   python test.py --verbose-helpful
> 
> This will tell you which rc file is being loaded, what backend is
> chosen, etc.
> 
> 
> 
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> _______________________________________________
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> 

>>>>> "Schindler" == Schindler Benjamin <bsc...@st...> writes:

    Schindler> Hi - I'm having problems - I don't get any line
    Schindler> displayed on my screen. My code looks as follows
    Schindler> (Init):

Make sure you are working with the line you think you are

Rather than doing this

        self.axes.add_line(Line2D([],[])

do this
        self.line = Line2D([],[]
        self.axes.add_line(self.line)

After you do this

            line = self.data[source][0] # Retreive the line

check to make sure that id(line) and id(self.line) are the same.

Here is a simple example that binds events to adding line data.
Perhaps you can follow this (in wx you need to click on the figure
once before the keypress events will be processed)

from matplotlib.lines import Line2D
import matplotlib.numerix as nx
from pylab import figure, show

xdata = []
ydata = []
line = Line2D(xdata, ydata)

def add_data(event):
    if event.key!='a': return
    xdata.extend(nx.mlab.rand(10))
    ydata.extend(nx.mlab.rand(10))
    line.set_data(xdata, ydata)
    fig.canvas.draw()
    
fig = figure()
ax = fig.add_subplot(111)
ax.add_line(line)
ax.set_title("Press 'a' to add more data")
fig.canvas.mpl_connect('key_press_event', add_data)


show()

>>>>> "Ryan" == Ryan Krauss <rya...@co...> writes:

    Ryan> I have an interesting problem importing pylab.  Most of my
    Ryan> work is stored on a FAT32 partition so I can access it from
    Ryan> windows or linux.  If I run python from a dos command open
    Ryan> on that partition I get:

    Ryan> E:\pythonscripts>python Enthought Edition build 1069 Python
    Ryan> 2.3.5 (#62, Mar 22 2005, 21:53:13) [MSC v.1200 32 bit
    Ryan> (Intel)] on win32 Type "help", "copyright", "credits" or
    Ryan> "license" for more information.
    >>>> import pylab
    Ryan> Traceback (most recent call last): File "<stdin>", line 1,
    Ryan> in ?  File "C:\Python23\Lib\site-packages\pylab.py", line 1,
    Ryan> in ?  from matplotlib.pylab import * File
    Ryan> "C:\Python23\Lib\site-packages\matplotlib\pylab.py", line
    Ryan> 199, in ?  import backends File
    Ryan> "C:\Python23\Lib\site-packages\matplotlib\backends\__init__.py",
    Ryan> line 15, in ?  raise ValueError, 'Unrecognized backend %s' %
    Ryan> backend ValueError: Unrecognized backend WxAgg

My guess is that this has nothing to do with partitions and that you
may be reading two different rc files.  One has 

  backend : WxAgg

which is erroneous (should  be WXAgg)

and the other has the win32 default

  backend : TkAgg

which is working for you.

To test, create a script test.py

  import pylab

and run it on both partitions with

  python test.py --verbose-helpful

This will tell you which rc file is being loaded, what backend is
chosen, etc.

On Aug 25, 2005, at 10:02 AM, Schindler Benjamin wrote:
> Since I have to leave from here I cannot yet produce a sample app that 
> would show this behaviour.

It doesn't have to be anything complex, just the bare functionality of 
whatever you're working on.  I'll be happy to take a look at it 
tomorrow.

> However, I tried to have a non-empty list at the beginning. I replaced 
> Line2D([],[]) with Line2D([1,2],[1,2]) just for the sake of trying - 
> with no luck apparently.

I'm sorry if I gave you the impression that that was the problem... 
it's a potential problem, but I didn't mean to suggest that it's why 
your plot isn't being draw.

Ken

Since I have to leave from here I cannot yet produce a sample app that =
would show this behaviour. However, I tried to have a non-empty list at =
the beginning. I replaced Line2D([],[]) with Line2D([1,2],[1,2]) just =
for the sake of trying - with no luck apparently.=20
I'll post a sample app tomorrow asap


-----Urspr=FCngliche Nachricht-----
Von: Ken McIvor [mailto:km...@gm...]
Gesendet: Do 25.08.2005 16:54
An: Schindler  Benjamin
Cc: mat...@li...
Betreff: Re: [Matplotlib-users] Line2D and wx Backend
=20
On Aug 25, 2005, at 9:33 AM, Schindler Benjamin wrote:
> Some event will occur and do the following (it does):
>         self.axes.add_line(Line2D([],[])

You really don't want to plot empty lines, as it will end up making 0,0=20
part of the total data range.  If your data points are on the positive=20
side of the origin and are a long way from zero you'll end up with a=20
lot of empty space on the axis and a little squiggle of a plot off to=20
the right.  I've been meaning to file a bug report about this behavior,=20
which I believe is caused by Numeric.array([]) returning=20
Numeric.zeros((0,), 'l').

> I do receive data, I see that I have lines in self.axes, but I never=20
> achieved to have a line on my display. What am I missing?

I can think of a few possible problems but wouldn't care to hazard a=20
guess without knowing how things like event generation and handling are=20
implemented I.   If you could send an example program which exhibits=20
this problem, I will be happy to look into it.

Ken

On Aug 25, 2005, at 9:33 AM, Schindler Benjamin wrote:
> Some event will occur and do the following (it does):
>         self.axes.add_line(Line2D([],[])

You really don't want to plot empty lines, as it will end up making 0,0 
part of the total data range.  If your data points are on the positive 
side of the origin and are a long way from zero you'll end up with a 
lot of empty space on the axis and a little squiggle of a plot off to 
the right.  I've been meaning to file a bug report about this behavior, 
which I believe is caused by Numeric.array([]) returning 
Numeric.zeros((0,), 'l').

> I do receive data, I see that I have lines in self.axes, but I never 
> achieved to have a line on my display. What am I missing?

I can think of a few possible problems but wouldn't care to hazard a 
guess without knowing how things like event generation and handling are 
implemented I.   If you could send an example program which exhibits 
this problem, I will be happy to look into it.

Ken

I have an interesting problem importing pylab.  Most of my work is 
stored on a FAT32 partition so I can access it from windows or linux.  
If I run python from a dos command open on that partition I get:

E:\pythonscripts>python
Enthought Edition build 1069
Python 2.3.5 (#62, Mar 22 2005, 21:53:13) [MSC v.1200 32 bit (Intel)] on 
win32
Type "help", "copyright", "credits" or "license" for more information.
 >>> import pylab
Traceback (most recent call last):
  File "<stdin>", line 1, in ?
  File "C:\Python23\Lib\site-packages\pylab.py", line 1, in ?
    from matplotlib.pylab import *
  File "C:\Python23\Lib\site-packages\matplotlib\pylab.py", line 199, in ?
    import backends
  File "C:\Python23\Lib\site-packages\matplotlib\backends\__init__.py", 
line 15,
 in ?
    raise ValueError, 'Unrecognized backend %s' % backend
ValueError: Unrecognized backend WxAgg
 >>>

But if I do the same things from a dos prompt open on the C partition it 
works fine:
C:\Documents and Settings\Ryan Krauss>python
Enthought Edition build 1069
Python 2.3.5 (#62, Mar 22 2005, 21:53:13) [MSC v.1200 32 bit (Intel)] on 
win32
Type "help", "copyright", "credits" or "license" for more information.
 >>> import pylab
 >>>

How can this be fixed?

Thanks,

Ryan

Hi - I'm having problems - I don't get any line displayed on my screen. =
My code looks as follows (Init):

        self.figure =3D Figure()
        self.axes =3D self.figure.add_subplot(111)

        self.canvas =3D FigureCanvas(self.Panel, -1, self.figure)
        self.sizer =3D wx.BoxSizer(wx.VERTICAL)
       =20
        self.sizer.Add(self.canvas, 1, wx.LEFT | wx.TOP | wx.GROW)
        self.Panel.SetSizer(self.sizer)

Some event will occur and do the following (it does):
        self.axes.add_line(Line2D([],[])

As soon this event arrives, I'll receive data:

 def receive(self, data, source):
            line =3D self.data[source][0] # Retreive the line
            xdata =3D line.get_xdata()
            ydata =3D line.get_ydata()
            for x in data:
                xdata.append(x[2]) # The data I've received
                ydata.append(x[0])
               =20
            self.data[source][0].set_data(xdata, ydata) # Set the data
            self.canvas.draw()
            self.canvas.gui_repaint()

I do receive data, I see that I have lines in self.axes, but I never =
achieved to have a line on my display. What am I missing?

Thanks
Benjamin Schindler

Hello all

I used to work with python 2.2 and with that version I was able to 
make multiple plots in one script like the example below:

from pylab import *

x = arange(10)

plot(x,   c = 'b')
print isinteractive()
show()

plot(x,   c = 'r')
print isinteractive()
show()

plot(x[::-1], c = 'g')
print isinteractive()
show()

The script would stop running during the visualisation of the plot 
and continue after I manually closed the plotting window.

However, with the newest python (2.4.1) and matplotlib.pylab version 
0.83.2, only the first window can be closed manually. Python then 
goes into interactive mode and all the plotting commands are plotted 
into one new window, which can not be accessed anymore by windows, 
the window hangs.

How can I make make multiple plots within one script using the newest 
python version?

thanks

Menno Straatsma