matplotlib-users Mailing List for matplotlib

Robert Dailey wrote:
> Ah; Thanks guys. I thought 'arange' was a class, however it is a 
> function. I get it now. Sorry for the confusion!

Just a note: most often (at least if you are working with floating point 
values) you want "linspace", rather than arange:

 >>> N.linspace(3, 99, 33)
array([  3.,   6.,   9.,  12.,  15.,  18.,  21.,  24.,  27.,  30.,  33.,
         36.,  39.,  42.,  45.,  48.,  51.,  54.,  57.,  60.,  63.,  66.,
         69.,  72.,  75.,  78.,  81.,  84.,  87.,  90.,  93.,  96.,  99.])

fewer surprises with floating point oddities.

-Chris


-- 
Christopher Barker, Ph.D.
Oceanographer

Emergency Response Division
NOAA/NOS/OR&R            (206) 526-6959   voice
7600 Sand Point Way NE   (206) 526-6329   fax
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Chr...@no...

C M wrote:
> I realize that the clearer question (and one which ties into my original 
> thread) is:  do I need pylab to do plot_date()?

No, plot_date is available as an axes method.  Most pylab plotting 
commands are thin wrappers for axes methods.

Eric

C M wrote:
> Mark, Mark, Brendan, John, thanks for the input.  I have a related 
> question that may help to continue to clear things up for me.  My goal 
> is to use matplotlib with wxPython, and I've been able to embed graphs 
> in wxPython apps fine so far (in this case, directly, not using wxMPL).  
> What I wanted to know is whether it is necessary to use pylab or not.  I 
> am a little unclear what the purpose of pylab is in distinction to 
> matplotlib itself.  I gather that pylab is a way to sort of emulate 
> Matlab, but I am unclear as to whether I need to be using pylab in my 
> apps or not.  I am not doing scientific plots, just fairly simple 
> graphs, though I may throw some regression lines and r values on there 
> at some point. 
> 
> I really just want to keep things as simple as possible, and if I don't 
> need to use pylab, I'd rather not.  Any insight would be helpful.  Thank 
> you.
> Che M

No, you do not need to use pylab.  It provides an API that is concise, 
comfortable, and responsive, especially for interactive use. Even in 
scripts that are mostly written in OO fashion, use of a few pylab 
functions (e.g., figure, subplot, show) can simplify the code.  This 
does not apply if you are embedding mpl in wx, however; none of the 
examples/embedding_in_*.py demos import pylab.

In addition to its role as an alternative interface to mpl, pylab 
imports most of numpy and some additional functions, providing a 
somewhat matlab-like environment.  This can be handy for interactive work.

There is a range of opinion regarding pylab, but I think the center of 
the range is: don't use pylab when mpl is embedded; use it very 
sparingly for normal programming; and for interactive use, if it makes 
you more productive, use it as much as you want.

Eric

I realize that the clearer question (and one which ties into my original
thread) is:  do I need pylab to do plot_date()?

On 9/4/07, C M <cmp...@gm...> wrote:
>
> Mark, Mark, Brendan, John, thanks for the input.  I have a related
> question that may help to continue to clear things up for me.  My goal is to
> use matplotlib with wxPython, and I've been able to embed graphs in wxPython
> apps fine so far (in this case, directly, not using wxMPL).  What I wanted
> to know is whether it is necessary to use pylab or not.  I am a little
> unclear what the purpose of pylab is in distinction to matplotlib itself.  I
> gather that pylab is a way to sort of emulate Matlab, but I am unclear as to
> whether I need to be using pylab in my apps or not.  I am not doing
> scientific plots, just fairly simple graphs, though I may throw some
> regression lines and r values on there at some point.
>
> I really just want to keep things as simple as possible, and if I don't
> need to use pylab, I'd rather not.  Any insight would be helpful.  Thank
> you.
> Che M
>
> On 9/4/07, Mark Bakker <ma...@gm...> wrote:
> >
> > Maybe this will get you going:
> >
> > import pylab as p
> > import datetime as d
> > from matplotlib.dates import DateFormatter
> > t = [ d.datetime (2007,9,1,12), d.datetime(2007,9,2,12), d.datetime(2007,9,3,12)
> > ]
> > t = p.date2num(t)
> > p.plot_date( t, [10,20,30] )
> > p.xticks(t)
> > y = DateFormatter('%Y-%m-%d')
> > p.gca().xaxis.set_major_formatter(y)
> > p.draw()
> >
> > Mark
> >
> > From: "C M" <cmp...@gm...>
> > > Subject: [Matplotlib-users] basic understanding of plotting dates
> > >
> > > x = (2007-09-01 12:00:02, 2007-09-02 12:00:02, 2007-09-03 12:00:02)
> > > y = (10, 20, 30)
> > >
> >
> >
>

On Tuesday 04 September 2007 17:53:56 Johann Cohen-Tanugi wrote:
> Jouni,
> thanks for your reply.
> I could test that
>  plot([1,2,3],[1,2,3])
>  setp(gca(), 'xlim', (3.0,1.0))
> works,
> but
> setp(gca(), 'xlim', reversed(getp(gca(), 'xlim')))


Johann,
You may find it easier to use methods instead of functions:

gca().set_xlim(gca().get_xlim()[::-1])

Note the [::-1], that will reverse your tuple.

Jouni,
thanks for your reply.
I could test that
 plot([1,2,3],[1,2,3])
 setp(gca(), 'xlim', (3.0,1.0))
works,
but
setp(gca(), 'xlim', reversed(getp(gca(), 'xlim')))

gives me an error :
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)

/home/cohen/<ipython console> in <module>()

/usr/lib/python2.5/site-packages/matplotlib/pylab.py in setp(*args, 
**kwargs)
   1386
   1387 def setp(*args, **kwargs):
-> 1388     ret = _setp(*args, **kwargs)
   1389     draw_if_interactive()
   1390     return ret

/usr/lib/python2.5/site-packages/matplotlib/artist.py in setp(h, *args, 
**kwargs)
    704             funcName = "set_%s"%s
    705             func = getattr(o,funcName)
--> 706             ret.extend( [func(val)] )
    707     return [x for x in flatten(ret)]
    708

/usr/lib/python2.5/site-packages/matplotlib/axes.py in set_xlim(self, 
xmin, xmax, emit, **kwargs)
   1543             raise ValueError('Cannot set nonpositive limits with 
log transform')
   1544
-> 1545         xmin, xmax = mtrans.nonsingular(xmin, xmax, 
increasing=False)
   1546         self.viewLim.intervalx().set_bounds(xmin, xmax)
   1547         if emit: self.callbacks.process('xlim_changed', self)

/usr/lib/python2.5/site-packages/matplotlib/transforms.py in 
nonsingular(vmin, vmax, expander, tiny, increasing)
    272         vmin, vmax = vmax, vmin
    273         swapped = True
--> 274     if vmax - vmin <= max(abs(vmin), abs(vmax)) * tiny:
    275         if vmin==0.0:
    276             vmin = -expander

TypeError: unsupported operand type(s) for -: 'reversed' and 'float'

I guess that the issue is that reversed returns the reversed iterator on 
the sequnce, not the reversed sequence itself.
Best,
Johann

Mark, Mark, Brendan, John, thanks for the input.  I have a related question
that may help to continue to clear things up for me.  My goal is to use
matplotlib with wxPython, and I've been able to embed graphs in wxPython
apps fine so far (in this case, directly, not using wxMPL).  What I wanted
to know is whether it is necessary to use pylab or not.  I am a little
unclear what the purpose of pylab is in distinction to matplotlib itself.  I
gather that pylab is a way to sort of emulate Matlab, but I am unclear as to
whether I need to be using pylab in my apps or not.  I am not doing
scientific plots, just fairly simple graphs, though I may throw some
regression lines and r values on there at some point.

I really just want to keep things as simple as possible, and if I don't need
to use pylab, I'd rather not.  Any insight would be helpful.  Thank you.
Che M

On 9/4/07, Mark Bakker <ma...@gm...> wrote:
>
> Maybe this will get you going:
>
> import pylab as p
> import datetime as d
> from matplotlib.dates import DateFormatter
> t = [ d.datetime (2007,9,1,12), d.datetime(2007,9,2,12), d.datetime(2007,9,3,12)
> ]
> t = p.date2num(t)
> p.plot_date( t, [10,20,30] )
> p.xticks(t)
> y = DateFormatter('%Y-%m-%d')
> p.gca().xaxis.set_major_formatter(y)
> p.draw()
>
> Mark
>
> From: "C M" <cmp...@gm...>
> > Subject: [Matplotlib-users] basic understanding of plotting dates
> >
> > x = (2007-09-01 12:00:02, 2007-09-02 12:00:02, 2007-09-03 12:00:02)
> > y = (10, 20, 30)
> >
>
>

Ah; Thanks guys. I thought 'arange' was a class, however it is a function. I
get it now. Sorry for the confusion!

On 9/4/07, Steve Lianoglou <lis...@ar...> wrote:
>
> On Sep 4, 2007, at 3:09 PM, Robert Dailey wrote:
>
> > Hi,
> >
> > I come from using Matlab and I was just curious if it was possible
> > to create an arange from a quick for loop of numbers? For example:
> >
> > 0:3:100 would generate:
> > 0, 3, 6, 9, 12, ...., 96, 99
>
> In ipython's pylab mode:
>
> In [1]: arange(3,100,3)
> Out[1]:
> array([ 3,  6,  9, 12, 15, 18, 21, 24, 27, 30, 33, 36, 39, 42, 45,
> 48, 51,
>         54, 57, 60, 63, 66, 69, 72, 75, 78, 81, 84, 87, 90, 93, 96, 99])
>
> > And I would want this range to be in an arange() object. Is there a
> > similar way of doing this? Thanks.
>
> Not sure what you mean by an "arange object", but arange returns a
> numpy array.
>
> HTH,
> -steve
>

Hi,

numpy.arange(0, 100, 3) perhaps ?

Matthieu

2007/9/4, Robert Dailey <rcd...@gm...>:
>
> Hi,
>
> I come from using Matlab and I was just curious if it was possible to
> create an arange from a quick for loop of numbers? For example:
>
> 0:3:100 would generate:
> 0, 3, 6, 9, 12, ...., 96, 99
>
> And I would want this range to be in an arange() object. Is there a
> similar way of doing this? Thanks.
>
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>
>

Hi,

I come from using Matlab and I was just curious if it was possible to create
an arange from a quick for loop of numbers? For example:

0:3:100 would generate:
0, 3, 6, 9, 12, ...., 96, 99

And I would want this range to be in an arange() object. Is there a similar
way of doing this? Thanks.

Xavier Gnata wrote:
> Hi all,
> 
> I looking for a way to modify the colorbar ticks font size.
> a=rand(100,100)
> imshow(a)
> colorbar()
> and then??
> 
> For instance, xticks(fontsize=20) works well to modify the ticks 
> fontsize along the X-axis but colorbar(fontsize=20) does not exists.
> I must be missing something.

cb = colorbar() # grab the Colorbar instance
for t in cb.ax.get_yticklabels():
     t.set_fontsize(20)

The colorbar function makes a new axes object, the "ax" attribute of the 
Colorbar instance returned by the colorbar function.  From that you get 
the list of text objects, which you then modify.

The pylab xticks and yticks functions make the retrieval and 
modification of the text objects easier, but they operate only on the 
"current axes", and the colorbar leaves the image axes as current.

An alternative method is to change the current axes:

imaxes = gca()
axes(cb.ax)
yticks(fontsize=20)
axes(imaxes)


Here I saved and restored the original axes in case you want to do 
something with the image axes after modifying the colorbar.

Eric

On 9/4/07, Brendan Barnwell <bre...@br...> wrote:

>         Incidentally, is there a reason why matplotlib can't just handle datetime
> objects itself?  The requirement of having to manually convert them to an ad-hoc
> matplotlib "format" (which is just an integer) seems rather obtuse.

It can handle native datetime objects, as of recent versions, but it
is not trivial.  The original versions of matplotlib assumed you were
passing in floating point (not integer) sequences (matplotlib was
written before python had a datetime object by the way, and we
supported conversion from mx datetime objects).  So we supplied some
conversion functions to convert mx dates or python datetimes to
floating point numbers so matplotlib could handle them like all other
numbers, and used custom tick locators and tick formatters decorate
the date axes.

More recent versions of matplotlib support plotting with custom (non
scalar) types via a conversion registry, so you can do the obvious
thing with native datetime objects.

JDH

Bill Dandreta wrote:
>>>C M wrote:
>> 1. What exactly must I import (which modules) and how do I import them
>> (in the sense of "import x" vs. "from x import y")?
>> 2. What arguments does the plot_date() command take and what is format
>> of the arguments?
>> 3. Do I have to make the conversion from the date format above to the
>> matplotlib date format?  If so, how?
> <<
> 
> The code snippet below should answer most of your questions.

	Incidentally, is there a reason why matplotlib can't just handle datetime 
objects itself?  The requirement of having to manually convert them to an ad-hoc 
matplotlib "format" (which is just an integer) seems rather obtuse.

-- 
--Brendan Barnwell
"Do not follow where the path may lead.  Go, instead, where there is no path, 
and leave a trail."
	--author unknown

Maybe this will get you going:

import pylab as p
import datetime as d
from matplotlib.dates import DateFormatter
t = [ d.datetime (2007,9,1,12), d.datetime(2007,9,2,12),
d.datetime(2007,9,3,12)
]
t = p.date2num(t)
p.plot_date( t, [10,20,30] )
p.xticks(t)
y = DateFormatter('%Y-%m-%d')
p.gca().xaxis.set_major_formatter(y)
p.draw()

Mark

From: "C M" <cmp...@gm...>
> Subject: [Matplotlib-users] basic understanding of plotting dates
>
> x = (2007-09-01 12:00:02, 2007-09-02 12:00:02, 2007-09-03 12:00:02)
> y = (10, 20, 30)
>

>>C M wrote:
> 1. What exactly must I import (which modules) and how do I import them
> (in the sense of "import x" vs. "from x import y")?
> 2. What arguments does the plot_date() command take and what is format
> of the arguments?
> 3. Do I have to make the conversion from the date format above to the
> matplotlib date format?  If so, how?
<<

The code snippet below should answer most of your questions.

2 problems:

autofmt_xdate() did not rotate the minor tick label, I don't now how to
do that.

I could not figure out how to draw minor tick grid lines.

import datetime as DT
import pylab as P
import time

x = ['2007-09-01 12:00:02', '2007-09-02 12:00:02', '2007-09-03 12:00:02']
y = [10, 20, 30]
fmt='%Y-%m-%d %H:%M:%S'
x1=[DT.datetime(*time.strptime(d,fmt)[:6]) for d in x]
dates=P.date2num(x1)
fig = P.figure()
ax = fig.add_subplot(111)
ax.plot_date(dates, y)
ax.xaxis.set_major_locator( P.DayLocator() )
ax.xaxis.set_minor_locator( P.HourLocator(12))
ax.xaxis.set_major_formatter( P.DateFormatter('%Y-%m-%d') )
ax.xaxis.set_minor_formatter( P.DateFormatter('%Y-%m-%d %H:%M:%S'))
ax.grid(True)
fig.autofmt_xdate()
P.show()

-- 
Bill

wjd...@at...

Gentoo Linux X86_64 2.6.20-gentoo-r8

Reclaim Your Inbox with http://www.mozilla.org/products/thunderbird/

All things cometh to he who waiteth as long as he who waiteth worketh like hell while he waiteth.

Hi all,

I looking for a way to modify the colorbar ticks font size.
a=rand(100,100)
imshow(a)
colorbar()
and then??

For instance, xticks(fontsize=20) works well to modify the ticks 
fontsize along the X-axis but colorbar(fontsize=20) does not exists.
I must be missing something.

Xavier

-- 
############################################
Xavier Gnata
CRAL - Observatoire de Lyon
9, avenue Charles André
69561 Saint Genis Laval cedex
Phone: +33 4 78 86 85 28
Fax: +33 4 78 86 83 86
E-mail: gn...@ob...
############################################ 

Michael Droettboom <md...@st...>
writes:

> I forgot to mention when I added baseline alignment -- I really have no 
> idea how to get a good baseline out of the usetex machinery, or if 
> that's even possible.

In principle it should be possible: TeX aligns its boxes on a baseline
unless you request otherwise, so you just have to make sure you position
your text or formula at known coordinates, and when you examine the
resulting page, you keep track of where the baseline should be. In
practice there probably are some more complications.

Or, resort to some TeX hackery... you can get TeX to report the
dimensions (height, depth, and width) of a box with \showbox:
http://uucode.com/blog/2006/02/26/showbox-in-latex/

-- 
Jouni K. Seppänen
http://www.iki.fi/jks

Thanks for fixing that.

I forgot to mention when I added baseline alignment -- I really have no 
idea how to get a good baseline out of the usetex machinery, or if 
that's even possible.

Now that you've fixed that bug, the baseline-misalignment problem should 
only affect those who explicitly turn on baseline alignment (using 
valignment = "baseline" on a text object).

If we can't get a baseline from usetex, we may have to decide whether 
it's worth keeping baseline alignment in as a feature at all...

Cheers,
Mike

Jouni K. Seppänen wrote:
> Xavier Gnata <gn...@ob...> writes:
> 
>> I do not know if we should post bug reports against matplotlib svn. 
> 
> Posting bug reports is likely to be helpful, but I suspect the
> developers' list might be more appropriate for bugs in the svn version.
> For bugs in released versions, I think John has told people to file a
> bug in the Sourceforge tracker and also send a message to the mailing
> list.
> 
>> Anyway, imshow is now fully broken this way :
> [...]
>> --> 200             w, h, d = renderer.get_text_width_height_descent(
>> ValueError: need more than 2 values to unpack
> 
> It's not in imshow really, but in the usetex branch of
> get_text_width_height_descent in the agg backend. I fixed the immediate
> problem, though baseline alignment is unlikely to work with usetex as of
> now.
> 

This is really basic stuff but I had some problems navigating in the
matplotlib website (*if anyone is interested, I'll list those issues at the
end).  I want to simply plot dates.  After reading the tutorial, I just
don't understand how to do it.

I will have lists of dates in the format like 2007-09-01 12:00:02 and a list
of corresponding values.  I would like to make a simple line graph with
markers at the data points and axis markers at reasonable intervals such as
each day or each week.  My questions are:

1. What exactly must I import (which modules) and how do I import them (in
the sense of "import x" vs. "from x import y")?
2. What arguments does the plot_date() command take and what is format of
the arguments?
3. Do I have to make the conversion from the date format above to the
matplotlib date format?  If so, how?

As an example how would I make a line plot with markers for this data?:

x = (2007-09-01 12:00:02, 2007-09-02 12:00:02, 2007-09-03 12:00:02)
y = (10, 20, 30)

Thanks.

--------------------------------------------
*the issues I had with navigating or figuring this out on my own:

Broken links on two of the functions:
http://matplotlib.sourceforge.net/datetime.html
http://matplotlib.sourceforge.net/dateutil.html

In the tutorial, under the dates section, the drange command is used but it
isn't clear which module has to be imported for it to work.  I tried it with
matplotlib and Python's datetime module and it didn't work.

In the date_demo1.py and dat_demo2 in the examples, date is gotten from the
quotes_historical_yahoo module calling up Yahoo's stock quotes.  The problem
for me was I wasn't sure which format the arguments were in that this
quotes_historical_yahoo() returns.