The Criteria API is mainly designed for that.
It provides an alternative way to define JPA queries.
With it you could build dynamic queries according to data provided at runtime.
To use it, you will need to create a custom repository implementation ant not only an interface.
You will indeed need to inject an EntityManager to create needed objects to create and execute the CriteriaQuery.
You will of course have to write boiler plate code to build the query and execute it.
This section explains how to create a custom repository with Spring Boot.
About your edit :
What I am trying to achieve is the possibility to create dynamic
reports without touching the code. A table would have records of
reports with names and SQl queries with default parameters like
begin_date, end_date etc, but with a variety of bodies.
If the queries are written at the hand in a plain text file, Criteria will not be the best choice as JPQL/SQL query and Criteria query are really not written in the same way.
In the Java code, mapping the JPQL/SQL queries defined in a plain text file to a Map<String, String> structure would be more adapted.
But I have some doubts on the feasibility of what you want to do.
Queries may have specific parameters, for some cases, you would not other choice than modifying the code. Specificities in parameters will do query maintainability very hard and error prone. Personally, I would implement the need by allowing the client to select for each field if a condition should be applied.
Then from the implementation side, I would use this user information to build my CriteriaQuery.
And there Criteria will do an excellent job : less code duplication, more adaptability for the query building and in addition more type-checks at compile type.