How to source a bash file having module loads?

Question

This is the python code:

#!/tool/pandora64/bin/python2.7.5

import os

shellFileName = "envVaribles.sh"
startUpFilePath = 'source /proj/pdkfc8/users/srikumar/phython/testEnv/' + shellFileName
print(startUpFilePath)
os.system(startUpFilePath)

This is the bash script:

#!/bin/bash

module load cadenceICOA
module load calibre

When I tried to load the bash script from the terminal (source bash file) it is working fine. When I tried to load using python code it is saying module: command not found.

What is module command? Have you added the directory that has it to your $PATH? — Arkadiusz Drabczyk
– Arkadiusz Drabczyk, Commented Dec 28, 2020 at 16:46
when i run the bash script in terminal it doesn't complaint...based on that i am thinking directory is added to the $PATH — srikumar440
– srikumar440, Commented Dec 28, 2020 at 17:27
module: command not found clearly shows that it's not added to $PATH. — Arkadiusz Drabczyk
– Arkadiusz Drabczyk, Commented Dec 28, 2020 at 17:29

napuzba · Accepted Answer · 2020-12-28 16:41:51Z

0

you can execute the bash script:

...
path = '/proj/pdkfc8/users/srikumar/phython/testEnv/' + shellFileName
startUpFilePath = path
...

or you can invoke the bash with the script

path = '/proj/pdkfc8/users/srikumar/phython/testEnv/' + shellFileName
startUpFilePath = '/bin/bash ' + path
...

answered Dec 28, 2020 at 16:41

napuzba

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3 Comments

srikumar440 Over a year ago

After using above solution.....still i am seeing "module: command not found"

napuzba Over a year ago

check in the terminal which module - it should give you full path to module, then update module in your script to this full path.

srikumar440 Over a year ago

module is a user interface to the Modules package. The Modules package provides for the dynamic modification of the user's environment via modulefiles.

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