read text files containing binary data as a single matrix in matlab

Question

I have a text file which contains binary data in the following manner:

00000000000000000000000000000000001011111111111111111111111111111111111111111111111111111111110000000000000000000000000000000
00000000000000000000000000000000000000011111111111111111111111111111111111111111111111000111100000000000000000000000000000000
00000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111100000000000000000000000000000000
00000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111100000000000000000000000000000000
00000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111100000000000000000000000000000000
00000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111100000000000000000000000000000000
00000000000000000000000000000000000000011111111111111111111111111111111111111111111111000111110000000000000000000000000000000
00000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111110000000000000000000000000000000
00000000000000000000000000000000000000000000111111111111111111111111111111111111110000000011100000000000000000000000000000000
00000000000000000000000000000000000000011111111111111111111111111111111111111111111111100111110000000000000000000000000000000
00000000000000000000000000000000000111111111111111111111111111111111111111111111111111110111110000000000000000000000000000000
00000000000000000000000000000000001111111111111111111111111111111111111111111111111111111111100000000000000000000000000000000
00000000000000000000000000000000000000001111111111111111111111111111111111111111111111000011100000000000000000000000000000000
00000000000000000000000000000000000000001111111111111111111111111111111111111111111111000011100000000000000000000000000000000
00000000000000000000000000000000000001111111111111111111111111111111111111111111111111111111000000000000000000000000000000000
00000000000000000000000000000000000000011111111111111111111111111111111111111111111110000011100000000000000000000000000000000
00000000000000000000000000000000000000000000011111111111111111111111111111111111100000000011100000000000000000000000000000000
00000000000000000000000000000000000000111111111111111111111111111111111111111111111111110111100000000000000000000000000000000

Please note that each 1 or 0 is independent i.e the values are not decimal. I need to find the column wise sum of the file. There are 125 columns in all and there are 840946 rows.

I have tried textread, fscanf and a few other matlab commands, but the result is that they all read each row in decimal format and create a 840946x1 array. I want to create a 840946x125 matrix to compute a column wise sum.

Suppose you have an error in your code. you should be able to read as text. Can you show? — bdecaf
– bdecaf, Commented Oct 3, 2012 at 9:50

Rody Oldenhuis · Accepted Answer · 2012-10-03 10:05:34Z

6

You can use textread to do it. Just read strings and later process them with sscanf, one digit at a time

A = textread('data.txt', '%s');
ncols = size(A, 1);
nrows = size(A{1}, 2);
A = reshape(sscanf([A{:}], '%1d'), nrows, ncols);

Note that now A is transposed, i.e. you have 125 rows.

The column-wise sum is then computed simply by

colsum = sum(A);

edited Oct 3, 2012 at 10:05

Rody Oldenhuis

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answered Oct 3, 2012 at 9:51

angainor

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Comments

Rody Oldenhuis · Accepted Answer · 2012-10-03 10:15:08Z

5

Here's a slightly hack-ish approach:

A = textread('data.txt', '%s');  

colsum = sum(cat(1,A{:})-'0')

Breakdown:

textread will read each line of 0's and 1's as a single string. A will therefore be a cell-string, with each element equal to a string of length 125.
cat(1,A{:}) will concatenate the cell string into a "normal" Matlab character array of size 840946-by-125.
Subtracting the ASCII-value '0' from any character array consisting of 0's and 1's will return their numeric representation. For example, 'a'-0 = 97, the ASCII-value for lower-case 'a'.
sum will finally sum over the columns of this array.

answered Oct 3, 2012 at 10:15

Rody Oldenhuis

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