I want to insert values into Sqlite3 table using Perl DBI. I was able to insert hard coded values without any problem. When I tried to use perl variables, then I get an error "DBD::SQLite::db do failed: no such column:"
This works:
$dbh->do("insert into Gene values (12, 'AAAAAA', 66, 86, 76)");
But this code
$dbh->do("INSERT INTO Gene values (NULL, $sequence, $siteNumber, $begin, $length)");
throws the error
DBD::SQLite::db do failed: no such column
You should always prepare and execute your SQL statements and use placeholders for variable values as a matter of course.
Try this code
my $sth = $dbh->prepare('INSERT INTO Gene VALUES (?, ?, ?, ?, ?)');
$sth->execute(undef, $sequence, $siteNumber, $begin, $length);
Your problem will have been at $sequence, which required quoting to be a valid SQL string literal in the insert statement. As a result it thought you were trying to refer to a column called AAAAAA, and not the string 'AAAAAA' that you intended. Perl's string interpolation doesn't add the quotes for you.
Placeholders and $dbh->prepapre are by far the most robust solution here though (for example, what to do if your string contains the quote character ' ? $dbh->prepare already has that coded correctly).
print "INSERT INTO Gene values (NULL, $sequence, $siteNumber, $begin, $length)";so you know what SQL command is being executed. We can't magically tell what the values of those 4 variables are.