I try to use stringr package to extract part of a string, which is between two particular patterns.
For example, I have:
my.string <- "nanaqwertybaba"
left.border <- "nana"
right.border <- "baba"
and by the use of str_extract(string, pattern) function (where pattern is defined by a POSIX regular expression) I would like to receive:
"qwerty"
Solutions from Google did not work.
In base R you can use gsub. The parentheses in the pattern create numbered capturing groups. Here we select the second group in the replacement, i.e. the group between the borders. The . matches any character. The * means that there is zero or more of the preceeding element
gsub(pattern = "(.*nana)(.*)(baba.*)",
replacement = "\\2",
x = "xxxnanaRisnicebabayyy")
# "Risnice"
gsub(pattern = "(.*nana)([[:alpha:]]+)(baba.*)", "\\2", x=my.string) for at least one letter.I do not know whether and how this is possible with functions provided by stringr but you can also use base regexpr and substring:
pattern <- paste0("(?<=", left.border, ")[a-z]+(?=", right.border, ")")
# "(?<=nana)[a-z]+(?=baba)"
rx <- regexpr(pattern, text=my.string, perl=TRUE)
# [1] 5
# attr(,"match.length")
# [1] 6
substring(my.string, rx, rx+attr(rx, "match.length")-1)
# [1] "qwerty"
left.border and right.border, 2. match up to first occurence of right.border and now I have: rx <- regexpr(paste0("(?<=", left.border, ")(.*?)+(?=", right.border, ")"), text = my.string, perl = TRUE). Big thank you to you!I would use str_match from stringr: "str_match extracts capture groups formed by
() from the first match. It returns a character matrix with one column for the complete match and one column for each group." ref
str_match(my.string, paste(left.border, '(.+)', right.border, sep=''))[,2]
The code above creates a regular expression with paste concatenating the capture group (.+) that captures 1 or more characters, with left and right borders (no spaces between strings).
A single match is assumed. So, [,2] selects the second column from the matrix returned by str_match.
You can use the package unglue:
library(unglue)
my.string <- "nanaqwertybaba"
unglue_vec(my.string, "nana{res}baba")
#> [1] "qwerty"
