The dependencies need to be bundled up into one normal javascript file in order for a browser to be able to read it.
In your project directory, you'll run these commands:
npm install bootstrap
npm install jquery
npm install tween
And wherever you want, run this command:
npm install --global browserify
Then create a javascript file (app.js) in your project directory like so:
require('bootstrap')
window.$ = window.jQuery = require('jquery');
window.TWEEN = require('tween.js')
// rest of code...
And save that file. Then run the following command:
browserify app.js -o bundle.js
Then in your html file, have this script tag:
<script src="bundle.js"></script>
You'll need to rerun that browserify command every time you make a change to app.js, so take a look at gulp.
scripttags pointing at CDN, in some cases.