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Is it possible to save font size (per file) after exit at PyCharm? Currently after I close PyCharm and open it again, the font size (per file) is returned to default.

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Reset to default
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Yes, it is possible. Just go to File | Settings | Editor | Colors & Fonts | Font

At first the option is disabled because it is not allowed to edit bundled scheme. To enable it just create your own scheme based on any of the bundled ones (click the Save As button next to Scheme Name):

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I tried, to change in Preferences | Editor | Colors & Fonts | Font (In my version, there is no Settings in File menu) but after closing PyCharm or reboot, the font size (per file) is not saved.

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