Answer #2
If the two arrays A and B are guaranteed to have the same size, a simpler plot command is possible. We start by noting that all of the following plot commands are equivalent.
plot A
plot A using 1:2
plot A using (column(1)):(column(2))
plot A using ($1):($2)
plot A using ($1):(A[$1])
This is because for purposes of plotting an array A is treated as providing two columns of information, the index i (column 1) and the value A[i] (column 2). Following standard gnuplot syntax, each field in the "using" specifier of a plot command may contain either a bare column number or an expression in parentheses. Inside an expression the value of a column can be referred either by prefixing a $ sign or by using the function column(i).
With this in mind, it follows that the command below plots the values of array B against the values of array A.
plot A using (A[$1]):(B[$1])