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I'm looking to create a custom date format for Elasticsearch. I have data in formats like:

yyyy-MM-dd'T'HH:mm:ss
yyyy-MM-dd'T'HH:mm:ss.SSS
yyyy-MM-dd'T'HH:mm:ss.SSSSSS

Is it possible to create a single custom date format to accept all 3 forms of the datetimes?

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You can add multiple formats by separating them with || as a separator. Here is the link to the official documentation with an example.

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