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I'm wondering if it is possible to call ImageJ from a standalone Python IDE. I want to begin image processing in ImageJ without opening the ImageJ Jython interpreter. I'm not clear if this is possible given the differences between Python & Jython.

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If your goal is to develop Jython code in a Python IDE, then see chapter 11 of the Jython book: Using Jython in an IDE.

If your goal is to somehow integrate native Python with ImageJ (i.e., not using Jython): it is not a solved problem yet. But perhaps this SO question and this post on the ImageJ forum will give you some ideas on how to start?

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