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I am trying to install neko v0.8.0... but when I enter "make",it halts like this:

comm/comm_wrapper.o: In function neko_comm_wrapper_init: 
/WORK/thuscc24team13_work/neko-0.8.0/src/comm/comm_wrapper.c:16:
undefined reference to MPI_Comm_f2c

gs/bcknd/device/device_mpi.o: In function device_mpi_isend:
/WORK/thuscc24team13_work/neko-0.8.0/src/gs/bcknd/device/device_mpi.c:66:
undefined reference to ompi_mpi_byte

gs/bcknd/device/device_mpi.o: In function device_mpi_irecv:
/WORK/thuscc24team13_work/neko-0.8.0/src/gs/bcknd/device/device_mpi.c:78:
undefined reference to ompi_mpi_byte

I have successfully installed jsonfortran,and exported MPIFC,CC,FC,as well as PKG_CONFIG with loaded modules as below:

$ echo $CC

mpiicc

$ echo $FC

mpiifort

$ echo $PKG_CONFIG_PATH

/home/thuscc24team13/WORK/json-fortran/main/lib64/pkgconfig:

/apps/compilers/intel/oneapi/v2023.0.0.25537/vtune/2023.0.0/include/pkgconfig/lib64:
/apps/compilers/intel/oneapi/v2023.0.0.25537/vpl/2023.0.0/lib/pkgconfig:
/apps/compilers/intel/oneapi/v2023.0.0.25537/tbb/2021.8.0/env/../lib/pkgconfig:
/apps/compilers/intel/oneapi/v2023.0.0.25537/mpi/2021.8.0/lib/pkgconfig:
/apps/compilers/intel/oneapi/v2023.0.0.25537/mkl/2023.0.0/lib/pkgconfig:
/apps/compilers/intel/oneapi/v2023.0.0.25537/ippcp/2021.6.3/lib/pkgconfig:
/apps/compilers/intel/oneapi/v2023.0.0.25537/inspector/2023.0.0/include/pkgconfig/lib64:
/apps/compilers/intel/oneapi/v2023.0.0.25537/compiler/2023.0.0/lib/pkgconfig

$ module list

Currently Loaded Modulefiles:

1) compilers/intel/oneapi-2023/compiler/config    
2) compilers/intel/oneapi-2023/mkl/config    
3) compilers/intel/oneapi-2023/mpi/config   
4) tools/cmake/v3.25.2  
5) compilers/intel/oneapi-2023/config 
6) mpi/openmpi/v4.1.4

I expect to solve the problem and install successfully

More details:

see here

Improve this question
7
  • I can't post pictures,so the layout may be messy... Commented Nov 8, 2024 at 10:50
  • Please trim your code to make it easier to find your problem. Follow these guidelines to create a minimal reproducible example. Commented Nov 8, 2024 at 12:37
  • mpiicc and mpiifort are the wrappers for Intel MPI, but ompi_mpi_byte is an Open MPI symbol, so there is something fishy with this environment. Better try a fresh install. Commented Nov 8, 2024 at 13:26
  • You have loaded oneapi and openmpi modules at the same time. Don't load the openmpi module, if you want to built with the oneapi modules Commented Nov 8, 2024 at 21:30
  • I tried to install without openmpi module ,but failed.... the neko v0.8.0 itself is strange.... Commented Nov 9, 2024 at 3:36
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